Atr-MIR166c

Basic info.

• miRNA locus ID
• Atr-MIR166c

• miRNA locus accession
• PmiREN000202

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00128  402029  402148  -

• Comments
• A member of family MIR166

• Confidence level
• 

Secondary strurture and sequence

   TATATGCATA  A    T        TT      CT      A          -TAT TT
             TG GTTG GGGGAATG  GTCTGG  CGAGGT CATCTGGGGT    C  
             || |||| ||||||||  ||||||  |||||| ||||||||||    |   
             AC CAAC CCCCTTAC  CGGACC  GCTCTA GTAGACCTTA    G  
CTACTCGAGCCGA  -    T        TT      AG      -          CACT AG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 1
• Chromosome: AmTr_v1.0_scaffold00128
• Cluster start: 402029
• Cluster end: 402382

Target gene info.[+]