Single miRNA

Atr-MIRN23b

Basic info.

miRNA locus ID
Atr-MIRN23b

miRNA locus accession
PmiREN000387

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00014 562675 562886 +

Comments
A member of family MIRN23

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

       -   C     TAA      T      T     AA               CCTC   T      T       G     AGATTCAGAAAGCTTGATGAATG
 ATTTGA AGA CCAAA   ATTTTG TCAAGA AGTGC  CTTATTCATGGGTAG    TCG AGTGTT GCACATC TCTGA                       
 |||||| ||| |||||   |||||| |||||| |||||  |||||||||||||||    ||| |||||| ||||||| |||||                       G
 TAAATT TCT GGTTT   TAAAAC AGTTCT TCACG  GGATAAGTATTCGTC    AGC TCGTAG TGTGTAG TCCTT                       
C      C   A     TCA      T      C     CC               ATTT   T      T       -     TATTCGGTACCGGAAGAGAGAGG

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00022.150	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.142	2.0	NA	NA