Atr-MIRN69

Basic info.

• miRNA locus ID
• Atr-MIRN69

• miRNA locus accession
• PmiREN000381

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00188  392782  393041  +

• Comments
• A member of family MIRN69

• Confidence level
• 

Secondary strurture and sequence

                 T     C     A         TA    AA   T CCTTT  A   CTCTCTCTCTC   ---TTT    TT  T      -----   T  T            -C      TTTAAATTTGCAC
                  GTTGC GCCTA TGATTCGGC  CAAT  TGG G     CT CAA           TCA      GTTC  TC CTTCCC     TAT CA GTGTGTATGTGT  TTGGAG             
                  ||||| ||||| |||||||||  ||||  ||| |     || |||           |||      ||||  || ||||||     ||| || ||||||||||||  ||||||              
                  TAACG TGGAT GCTAGGTTG  GTTA  ACC C     GA GTT           AGT      TAAG  AG GAAGGG     GTA GT TATATATATACG  AATCTC             
AGTGGTGACTGCATTTAG     -     -         --    --   - TCTCT  -   ACCTTATATAA   TCTCCC    -T  -      CTTAC   T  T            AC      TCTCTCTCTCACT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]