Atr-MIRN59

Basic info.

• miRNA locus ID
• Atr-MIRN59

• miRNA locus accession
• PmiREN000370

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00070  1332364  1332554  +

• Comments
• A member of family MIRN59

• Confidence level
• 

Secondary strurture and sequence

AAAAAATAG      -     ----------     A       --    T   ---A   CA   AGGTCAACCTGATTCAAATATACAACATAGATTCTGGCAATGCA
         GGGGCT CAGAG          GGAAG GGATTGT  ACCA GAG    GAA  AGG                                            
         |||||| |||||          ||||| |||||||  |||| |||    |||  |||                                             
         CCTCGA GTCTT          TCTTC CCTAGCG  TGGT TTC    TCT  AGG                                            
               T     AGCTCTAGAA     -       GA    -   ATCC   --   GCCATTGATACCCCTTTCGCAGAGAAACTAAACGTGAATAAGTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]