Atr-MIRN40e

Basic info.

• miRNA locus ID
• Atr-MIRN40e

• miRNA locus accession
• PmiREN000366

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00056  920598  920719  -

• Comments
• A member of family MIRN40

• Confidence level
• 

Secondary strurture and sequence

   G     C          C          G         C           ----     AG
  A GATCT AAAAGATCAT ATTAAATTTG CATAGATTT TAAAAAAGTTA    TCACA  
  | ||||| |||||||||| |||||||||| ||||||||| |||||||||||    |||||   
  T CTGGA TTTTCTAGTG TAATTTAAAC GTGTTTAGA ATTTTTTCAGT    GGTGT  
CA A     A          A          A         A           TCAA     GA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]