Atr-MIRN40d

Basic info.

• miRNA locus ID
• Atr-MIRN40d

• miRNA locus accession
• PmiREN000364

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00048  3451611  3451733  +

• Comments
• A member of family MIRN40

• Confidence level
• 

Secondary strurture and sequence

  A            CT       A      GC      T    C       CAA   C  CAC
   GGACTCCAAAGG  CACCATT AATTTG  ATAGAT TCTA AAAAAGT   GTC TA   
   ||||||||||||  ||||||| ||||||  |||||| |||| |||||||   ||| ||    
   CCTGGGGTTTTC  GTGGTAA TTAAAC  TGTTTA AGAT TTTTTCA   TAG AT   
CAC            TC       C      TA      T    -       --A   T  ACC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]