Atr-MIRN47c

Basic info.

• miRNA locus ID
• Atr-MIRN47c

• miRNA locus accession
• PmiREN000354

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00022  6634166  6634287  +

• Comments
• A member of family MIRN47

• Confidence level
• 

Secondary strurture and sequence

       C            C     A    GC      CTT   AA   TTA     -A  AC
  AGGAT TCAAATGATCAC ATTAA TTTG  ATAGAT   TAT  AAA   TCAAA  TC  
  ||||| |||||||||||| ||||| ||||  ||||||   |||  |||   |||||  ||  T
  TCCTA AGTTTACTAGTG TAATT AAAC  TATTTA   ATA  TTT   AGTTT  AG  
CA     A            A     -    TA      --T   CG   -TC     AG  TA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]