Atr-MIRN51

Basic info.

• miRNA locus ID
• Atr-MIRN51

• miRNA locus accession
• PmiREN000351

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00019  1998741  1998957  +

• Comments
• A member of family MIRN51

• Confidence level
• 

Secondary strurture and sequence

GTGGACCATTTTGTGGTAAAA      --     -GG    G   AT     G  --------------TTCT      --ACCAAATACGTG     -  AT    --AT   --         CCT
                     TGTTTT  TCCAT   GTTT GTT  CATAT CT                  TCCCTT              TAAGG CA  TTTA    GTA  AAAATATTT   
                     ||||||  |||||   |||| |||  ||||| ||                  ||||||              ||||| ||  ||||    |||  |||||||||    
                     ACGAAA  AGGTA   TAAG TAG  GTATA GG                  AGGGAA              ATTCC GT  AAAT    CAT  TTTTATAAA   
             ACTCAGGA      TA     ATA    G   --     G  TTAAGTTAGGTAAATTAT      ACCACAGTAACTAA     A  GT    CAAC   AC         AAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]