Atr-MIRN48

Basic info.

• miRNA locus ID
• Atr-MIRN48

• miRNA locus accession
• PmiREN000346

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00007  8604465  8604593  +

• Comments
• A member of family MIRN48

• Confidence level
• 

Secondary strurture and sequence

  A        A         T                         -CTC    GACATG TAGT
   TCTACACC TTCATTTTA TTGGATGGTGTAGATTTGGCACGAT    AAGA      C    
   |||||||| ||||||||| |||||||||||||||||||||||||    ||||      |     
   AGATGTGG AGGTAGAAT AACCTATCACATTTAAACTGTGCTG    TTCT      G    
ACA        C         T                         AAAA    ATTATA TTTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]