Atr-MIRN40a

Basic info.

• miRNA locus ID
• Atr-MIRN40a

• miRNA locus accession
• PmiREN000338

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00001  8186369  8186490  -

• Comments
• A member of family MIRN40

• Confidence level
• 

Secondary strurture and sequence

  T     C                  T      TA   TTC  A      CAA   CCACAT
   GGACC CAAAGGATCACCATTAAA TTGGCA  GAT   TA AAAAGT   GTT      
   ||||| |||||||||||||||||| ||||||  |||   || ||||||   |||       
   CCTGG GTTTTTTAGTGGTAATTT AACCGT  CTA   AT TTTTCA   CAA      
TAT     A                  C      GC   TAA  C      --A   TCTATC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]