Atr-MIRN36

Basic info.

• miRNA locus ID
• Atr-MIRN36

• miRNA locus accession
• PmiREN000329

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00039  5330031  5330253  -

• Comments
• A member of family MIRN36

• Confidence level
• 

Secondary strurture and sequence

  AATTCAAACACTACTTGACATC    A             C                              A                 GC   C  -    T     CATA
                        CGTG TCGTTAGATCGGC TAGATTCAATCTGGACCGTTGGGCTCATAT TTCATATGAGCTAGTGG  TAA TC CAGC TTTTC    
                        |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||  ||| || |||| |||||     
                        GCAC GGCAGTCTAGTCG ATCTAAGTTAGACTTGGCGATCCGAGTATA AAGTATATTCGATCACC  ATT AG GTCG AAAAG    
ATATTAATTTTATATTTTATTTTA    C             A                              C                 -A   -  A    T     ATAT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]