Atr-MIR8616

Basic info.

• miRNA locus ID
• Atr-MIR8616

• miRNA locus accession
• PmiREN000305

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00049  1238509  1238812  +

• Comments
• A member of family MIR8616

• Confidence level
• 

Secondary strurture and sequence

  C  -        T  -     T  -              T  -       CG  --   CAA  - G  CTCTGAATGAGGATTCGAGATGAGGCTTTACTTTGATTTCTTAGAGGCCCGGGCCTTATAAAATCGAAAGTGCAATCCGAATGAGGATT
TT AT AGTCGGTG TG GAAAT GA TTTTAGAGCCATCA GG AGATTTT  AT  GCC   AA T CT                                                                                         
|| || |||||||| || ||||| || |||||||||||||| || |||||||  ||  |||   || | ||                                                                                         C
TA AA TATTAGCT AC ACCTT TA CTAAAATTTCGGTA GT TTTCTAA  AG  TAC   GG C TT                                                                                         
  -  A        -  T     -  T              -  T       --  AA   ---  A -  CACAAAAAGTCTATTCCGAAACTCCACTTAGAGATGAAATACAAAATATTCCGGACCCGGAGATACTTTAGTTTTATTTCGGAATAGAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]