Atr-MIR8598

Basic info.

• miRNA locus ID
• Atr-MIR8598

• miRNA locus accession
• PmiREN000298

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00007  304779  305089  -

• Comments
• A member of family MIR8598

• Confidence level
• 

Secondary strurture and sequence

G   - GG   -                 A   -    C   -   G   -   T   -                      C   T   C  A -  -       A   --      TT       C   -     G   -     A   -           A   - TAT
 TTT T  TTC TAAGGTGAAGTTTAGTC GCA CGAT GGT GGT CGT GAA GAG AGGTCATTTTTAGTCAATTTTT AGA ATC AT A TT TGACGGA CCC  TTATTT  TCTGCCT TGA TCGAC AGT TTGAA GGG AAATCAGGTGG AAT T   
 ||| |  ||| ||||||||||||||||| ||| |||| ||| ||| ||| ||| ||| |||||||||||||||||||||| ||| ||| || | || ||||||| |||  ||||||  ||||||| ||| ||||| ||| ||||| ||| ||||||||||| ||| |    
 AAA A  AAG AAGATTCCGCTTCAAAT CGG TGTG CTA CCG TCA GCA CTT TTCTCCAGTAAAAATCAGTTAA AAA TCT TA G TA TAAACTG CCT  GGGAAT  AAAAGAT GGA ACTAG TTG TCAAA TTT CTCTTTAGTTC ATT T   
    A --   A                 -   C    -   A   -   G   -   T                      -   C   -  - A  C       -   CG      --       -   T     -   A     -   G           -   A TAG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]