Atr-MIR8587

Basic info.

• miRNA locus ID
• Atr-MIR8587

• miRNA locus accession
• PmiREN000295

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00049  2701463  2701757  -

• Comments
• A member of family MIR8587

• Confidence level
• 

Secondary strurture and sequence

       T  CAG  ---      T  -      T  -                    CT  -- T  -    T  A  -      A  -   T         AT  --         TACAAAAATAAA         CGTC  --         C - -        TG
 GCATTT GG   TT   TGAAAG CC AACTTT GA ACTGCCCAAAATACAAAAAA  AA  T TG TTTG GT GT TTGAAA TC CAA CTTTCGAAT  TC  CAAAACACA            AAAAGAAAA    AA  GTGTTTGGC G T TCGAAAGT  
 |||||| ||   ||   |||||| || |||||| || ||||||||||||||||||||  ||  | || |||| || || |||||| || ||| |||||||||  ||  |||||||||            |||||||||    ||  ||||||||| | | ||||||||  G
 TTCGTA AA   CC   AAGTTT TC GGTTGA AA TTTGGCGGGTTTTATGTTTT  TT  T TA ACAA AC CG CAAGTT TT AGG TTGAAAGCT  TG  AGGTTTTGT            GTTTTTCTT    TT  TTCATAAAC C G CAAGTTTT  
A      -  ---  CCA      -  T      -  C                    --  TT -  C    -  C  C      -  C   -         --  GT         ------------         ----  TT         - C T        CA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]