Atr-MIR8562a

Basic info.

• miRNA locus ID
• Atr-MIR8562a

• miRNA locus accession
• PmiREN000270

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00020  3302188  3302449  +

• Comments
• A member of family MIR8562

• Confidence level
• 

Secondary strurture and sequence

 AAT   --          A   -                       A   ATTCATTAAAAATAAGCAAAA    GA       AAAAAAAAAAAATTACATGAAATAAATTGACCAAAATACCATCGAAAAGTCTCAAGGGTAT
T   TTT  TTTTTTTTAC AAT CGGAATGATCTGAAATTTGGAGC TGT                     CTAG  AAAATAT                                                             
|   |||  |||||||||| ||| ||||||||||||||||||||||| |||                     ||||  |||||||                                                              
A   AAA  AAAAAAAAAG ATG TTAGCCTTACTAGATTTTAAACC TTG                     ACAC  ATGTAGA                                                             
 ---   GT          -   C                       -   --------------------C    --       ATCACTCTGCGTGGATTACTTTTATATTTTGTTTATTAAGTGCTTTTGTTTTAACTGGTTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]