Single miRNA

Atr-MIR828

Basic info.

miRNA locus ID
Atr-MIR828

miRNA locus accession
PmiREN000265

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00009 8165616 8165755 +

Comments
A member of family MIR828

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

    TT     TC  AC   A   T      C          TC  ATCT    -    --T     -CATA  AG
      TCTCC  TG  TAA GTT CTTGCT AAATGAGTAT  CA    GCTT TCTC   CCCTA     CA  
      |||||  ||  ||| ||| |||||| ||||||||||  ||    |||| ||||   |||||     ||   
      GGAGG  AC  ATT CAA GAACGA TTTACTCATA  GT    CGGG AGAG   GGGGT     GT  
ATTATT     TC  --   C   C      C          GT  --CT    T    TAC     TTTTA  TC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00062.11	2.0	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.93	2.0	1	NA