Single miRNA

Atr-MIR477b

Basic info.

miRNA locus ID
Atr-MIR477b

miRNA locus accession
PmiREN000261

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00003 741318 741423 +

Comments
A member of family MIR477

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

  TTTCATGGCACCTCACC          CT                  GG  TT
                   TTCACTCTCC  CAAGGGCTTCTGATCCTT  CT  
                   ||||||||||  ||||||||||||||||||  ||  C
                   AGGTGAGAGG  GTTTCCGAAGATTAGGAG  GA  
CTTCCGTTTCGTTGAACGT          -T                  --  TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00026.111	2.0	2	NA
evm_27.model.AmTr_v1.0_scaffold00026.113	2.0	2	NA
evm_27.model.AmTr_v1.0_scaffold00026.118	2.0	2	NA