Atr-MIR398a

Basic info.

• miRNA locus ID
• Atr-MIR398a

• miRNA locus accession
• PmiREN000256

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00102  1169837  1169979  +

• Comments
• A member of family MIR398

• Confidence level
• 

Secondary strurture and sequence

     -     GA  T   AA    A     A  A         AT --         AATATTGTGTATGTGTG
  AGA ATGGG  AG CTC  CAGG GCGAT TG GAACACACA  C  ATATGCATA                 
  ||| |||||  || |||  |||| ||||| || |||||||||  |  |||||||||                  
  TCT TACCC  TC GAG  GTCC CGCTG AC CTTGTGTGT  C  GCGTGTACG                 
TA   A     -G  C   CC    C     G  C         -T GT         TGTACGTGTGCACGTGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]