Atr-MIR396p

Basic info.

• miRNA locus ID
• Atr-MIR396p

• miRNA locus accession
• PmiREN000253

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00029  1065365  1065499  -

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

GA  -    -  C     G  -C                 A A  GC      ACACCA   C     GG
  CT TGAT CT TTCAT CT  TTCCACGGCTTTCTTGA C TG  GCTTAG      CTT CACAG  
  || |||| || ||||| ||  ||||||||||||||||| | ||  ||||||      ||| |||||   
  GA ACTA GA AAGTA GA  AGGGTGTCGAAAGAACT G AC  TGAATC      GAA GTGTC  
AA  T    A  A     -  AA                 C A  AA      -GAAAC   A     CT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]