Atr-MIR396o

Basic info.

• miRNA locus ID
• Atr-MIR396o

• miRNA locus accession
• PmiREN000252

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00046  1688246  1688396  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

  TGATGACTCTCTC    C C            C        -  C    --G  GATAGAAAGAGAAATTTAGGGT
               TGTA T TTCCACAGCTTT TTGAACTG CG CTGA   TC                      
               |||| | |||||||||||| |||||||| || ||||   ||                       
               ACGT A AGGGTGTCGAAA AACTTGGC GT GACT   TT                      
GTGTCTCTGAGGGTT    A A            T        A  A    ATG  CTTTAGAACCCCATTAACACTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]