Atr-MIR396a

Basic info.

• miRNA locus ID
• Atr-MIR396a

• miRNA locus accession
• PmiREN000251

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00013  1544511  1544646  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

   --------T       ---   -   CTC  - A     T   -  -    A  C ----      ACCC T  TCTGCC
ATT         GATCTTT   TCC ATG   TC C CAGGC TTC TT GAAC TG T    GCTCAA    G CT      
|||         |||||||   ||| |||   || | ||||| ||| || |||| || |    ||||||    | ||      A
GAA         AAGGTAC   AGG GTC   CG A AGAAT TTG AC GTGA GT T    CGAAGA    G GT      
   CATTAAGTA       AAA   G   ---  T -     -   A  A    -  - GAAA      ---- -  TCTTGT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]