Atr-MIR396m

Basic info.

• miRNA locus ID
• Atr-MIR396m

• miRNA locus accession
• PmiREN000249

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold03501  2676  2813  -

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

 GATTTGAT         -C         G           A  G       -ACG  TCC       ATTA
         GTTTTCATG  TTTTCACAG CTTTCTTGAAC TG TATTCAG    GT   TCTTCGA    
         |||||||||  ||||||||| ||||||||||| || |||||||    ||   |||||||     
         CAAAGGTAC  AGAGGTGTC GAAAGAACTTG AC ATGAGTT    CG   AGAGGCT    
CATTATTAG         AA         -           G  A       GTAA  --T       CTTG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]