Atr-MIR396g

Basic info.

• miRNA locus ID
• Atr-MIR396g

• miRNA locus accession
• PmiREN000243

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00013  1238077  1238213  -

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

 GTT    -         -C          C          A  G       -ACG  CC       GTTA
G   TGAT GTTTTCATG  TTTTCACAGG TTTCTTGAAC TG TATTCAG    GC  TCTTCGA    
|   |||| |||||||||  |||||||||| |||||||||| || |||||||    ||  |||||||     
C   ACTA CAAAGGTAC  AGAGGTGTCT AAAGAACTTG AC ATGAGTT    CG  AGAGGCT    
 AGT    A         AA          -          G  A       GTAA  -T       ATCG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]