Atr-MIR396e

Basic info.

• miRNA locus ID
• Atr-MIR396e

• miRNA locus accession
• PmiREN000242

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold02939  2897  3036  +

• Comments
• A member of family MIR396

• Confidence level
• 

Secondary strurture and sequence

    TCA    C    C   AT          -           T  T  C   -   AT  A     GA  ACC
       TGAT GTTT CAT  TTTTCCACAG CTTTCTTGAAC TG TA TCA ACA  GC TCTCC  GA   
       |||| |||| |||  |||||||||| ||||||||||| || || ||| |||  || |||||  ||    
       ACTA CAAA GTA  GAAAGGTGTC GAAAGAACTTG AC AT AGT TGT  CG GGAGG  CT   
CTTCTAA    -    A   -C          C           T  C  A   C   -C  -     AG  CAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]