Single miRNA

Atr-MIR394

Basic info.

miRNA locus ID
Atr-MIR394

miRNA locus accession
PmiREN000235

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00001 3120995 3121123 +

Comments
A member of family MIR394

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

      TT  TG     -ATT       TTC             CCT    CTAAAAAATGAGAGT
 AGGGT  CT  CAGAG    GTTGGCA   TGTCCACCTCCTC   CTCT               
 |||||  ||  |||||    |||||||   |||||||||||||   ||||               T
 TCTCA  GG  GTCTC    CAACCGT   ACGGGTGGAGGAG   GCTA               
C     TC  GT     ACAC       CCT             --T    CGTAATTTTAGCTTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00013.9	1.0	1	NA
evm_27.model.AmTr_v1.0_scaffold02101.1	1.5	1	NA
evm_27.model.AmTr_v1.0_scaffold02587.1	2.0	1	NA