Atr-MIR172

Basic info.

• miRNA locus ID
• Atr-MIR172

• miRNA locus accession
• PmiREN000220

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00012  6005575  6005740  +

• Comments
• A member of family MIR172

• Confidence level
• 

Secondary strurture and sequence

  TCAGTCAGTGT                          A        ---A  AGA      --       GTGG    ACACTTCA
             TTGCTGGTGTAGCATCATCAAGATTC CATCTTGT    AG   TCCCTT  TGAATCG    GATC        
             |||||||||||||||||||||||||| ||||||||    ||   ||||||  |||||||    ||||         
             AACGGCTACGTCGTAGTAGTTCTAAG GTAGAATA    TC   AGGGAG  ATTTAGC    CTAG        
TGTTTCAGTGAAT                          G        CCAG  GAA      AG       ---A    AATACATC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]