Atr-MIR171c

Basic info.

• miRNA locus ID
• Atr-MIR171c

• miRNA locus accession
• PmiREN000216

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00088  670598  670720  -

• Comments
• A member of family MIR171

• Confidence level
• 

Secondary strurture and sequence

    C     A         GC  C      C              A   AAAT      G --A GA
     ATTGA GGAGTTCTT  GA ATTGGC CGGTTCGATCAGAG TGA    GCCAAG A   A  
     ||||| |||||||||  || |||||| |||||||||||||| |||    |||||| |   |   
     TAACT CTTCGAGAA  CT TAACCG GCCGAGTTAGTCTC ATT    TGGTTT T   T  
TTTCC     -         -A  A      C              -   ----      G AGG AA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]