Atr-MIR166e

Basic info.

• miRNA locus ID
• Atr-MIR166e

• miRNA locus accession
• PmiREN000204

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00027  2506653  2506870  +

• Comments
• A member of family MIR166

• Confidence level
• 

Secondary strurture and sequence

          CT   -TT   A        TT      C    G   - CCTCTCTCTCTCTTACCCCTTTCTCT     C  T    TCTTCTCTCTCTCTCGTCCCTTTCTCTCTTTCTCTC
   GGGGGAG  TTG   TTG GGGGAATG  GTCTGG TCGA GCC C                          ATCAT TC CAAT                                    
   |||||||  |||   ||| ||||||||  |||||| |||| ||| |                          ||||| || ||||                                     
   CCCCTTC  AAC   AAC CCCCTTAC  CGGACC GGCT CGG G                          TGGTA AG GTTA                                    
AAG       --   TTT   C        TT      A    G   T ----------------------TTGT     -  T    TCTTTCTCTATTATCACTCTCTTTCCCCTAAAATCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Target gene info.[+]