Single miRNA

Atr-MIR157b

Basic info.

miRNA locus ID
Atr-MIR157b

miRNA locus accession
PmiREN000193

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00061 4133450 4133577 +

Comments
A member of family MIR157

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

CTTGAAA       --------T   -  T  A      -            AAA  AA  C     ATAGG
       GTAGAGT         GGT TG TG CAGAAG ATAGAGAGCACA   CC  CA AAGCA     
       |||||||         ||| || || |||||| ||||||||||||   ||  || |||||     C
       TATCTCA         CCG AC AC GTCTTC TATCTCTCGTGT   GG  GT TTCGT     
              CGAAGATTC   T  C  C      A            ATA  AG  C     ACTTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00013.75	1.5	1	NA
evm_27.model.AmTr_v1.0_scaffold00022.228	1.5	1	NA