Single miRNA

Atr-MIR157a

Basic info.

miRNA locus ID
Atr-MIR157a

miRNA locus accession
PmiREN000192

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00044 4041321 4041446 +

Comments
A member of family MIR157

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AGAGA  -   TC     -----T  T         -A             --      C      TGG
     GG GGG  TGGTG      TG TGACAGAAG  TAGAGAGCACATA  AAGTAA GTGCAG   
     || |||  |||||      || |||||||||  |||||||||||||  |||||| ||||||   G
     CC CCC  ACCAC      AC ACTGTCTTC  ATCTCTCGTGTAT  TTTATT TACGTT   
    C  A   TT     TCGTCC  T         CG             GT      T      TGC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00013.75	1.5	1	NA
evm_27.model.AmTr_v1.0_scaffold00022.228	1.5	1	NA